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Spatiotemporal evolution and transmission dynamics of Alpha and Delta SARS-CoV-2 variants contributing to sequential outbreaks in Cambodia during 2021
Su et al. Communications Medicine 2024
Transmission of swine influenza A viruses along pig value chains, Cambodia, 2020–2022
Hidano et al. Emerging Infectious Diseases 2024
Discordant phylodynamic and spatiotemporal transmission patterns driving the long-term persistence and evolution of human coronaviruses
Mah M, Zeller M, Zhang R et al. npj Viruses 2024
Evolution and ecology of Jeilongvirus among wild rodents and shrews in Singapore
Ch'ng L, Low D et al. One Health Outlook 2023
classLog: Logistic regression for the classification of genetic sequences
Zeller et al. Frontiers in Virology 2023
The genomic landscape of swine influenza A viruses in Southeast Asia
Zeller et al. PNAS 2023
Genomic epidemiology of SAR-CoV-2 in Cambodia, January 2020 to February 2021.
Su et al. Virus Evolution 2023
Spike-independent infection of human coronavirus 229E in bat cells.
Mah M, Linster M et al. Microbiology Spectrum 2023
Cencurut virus: a novel orthonairovirus from Asian house shrews (Suncus murinus) in Singapore.
Low et al. One Health 2023
Co-circulation of alpha- and beta-coronaviruses in Pteropus vampyrus flying foxes from Indonesia.
Ch'ng et al. Transboundary and Emerging Diseases 2022
A look inside the replication dynamics of SARS-CoV-2 in Blyth's horseshoe bat (Rhinolophus lepidus) kidney cells.
Auerswald et al. Microbiology Spectrum 2022
Ancestral sequence reconstruction pinpoints adaptations that enable avian influenza virus transmission in pigs.
Su Wen et al. Nature Microbiology 2021
H5Nx viruses emerged during the Suppression of H5N1 Virus populations in poultry.
Li et al. Microbiology Spectrum 2021
Genetic characterization of highly pathogenic avian influenza A (H5N8) virus in Pakistani live bird markets reveals rapid diversification of clade 2.3. 4.4 b viruses.
Ali et al. Viruses 2021
Host specificity of Hepatocystis infection in short-nosed fruit bats (Cynpoterus brachyotis) in Singapore.
Low et al. International Journal for Parasitology: Parasites and Wildlife 2021
Genetic diversity and expanded host range of astroviruses detected in small mammals in Singapore.
Neves et al. One Health 2021
Etiology of febrile respiratory infections in the general adult population in Singapore, 2007-2013.
Chen et al. Heliyon 2021
Discovery and genomic characterization of a 382-nucleotide deletion in ORF7b and ORF8 during the early evolution of SARS-CoV-2.
Su et al. mBio 2020
Divergent evolutionary trajectories of influenza B viruses underlie their contemporaneous epidemic activity.
Virk R, Jayakumar J et al. PNAS 2020
Effects of a major deletion in the SARS-CoV-2 genome on the severity of infection and the inflammatory response: an observational cohort study.
Lye et al. The Lancet 2020
Adenoviral infections in Singapore: Should new antiviral therapies and vaccines be adopted?
Coleman et al. The Journal of Infectious Diseases 2020
Genetic diversity of respiratory enteroviruses and rhinoviruses in febrile adults, Singapore, 2007-2013.
Linster et al. Influenza and Other Respiratory Viruses 2020
Avian influenza A(H9N2) virus in poultry worker, Pakistan, 2015.
Ali et al. Emerging Infectious Diseases 2019
Discovery and characterization of novel bat coronaviruses lineages from Kazakhstan.
Mendenhall et al. Viruses 2019
Diversity and evolution of viral pathogen community in cave nectar bats (Eonycteris spelaea).
Mendenhall et al. Viruses 2019
Isolation of highly pathogenic H5N1 influenza viruses in 2009–2013 in Vietnam.
Zhong et al. Frontiers in Microbiology 2019
Serologic evidence of fruit bat exposure to filoviruses, Singapore, 2011–2016
Liang et al. Emerging Infectious Diseases 2018
Detection and genetic characterization of diverse Bartonella genotypes in the small mammals of Singapore.
Neves et al. Zoonoses and Public Health 2018
Clinical and molecular epidemiology of human parainfluenza viruses 1-4 in children from Vietnam.
Linster et al. Scientific Reports 2018
Adaptive evolution during the establishment of European avian-like H1N1 influenza A virus in swine.
Joseph et al. Evolutionary Applications 2018
Identification of a Lineage D Betacoronavirus in Cave Nectar Bats (Eonycteris spelaea) in Singapore and an overview of Lineage D reservoir ecology in SE Asian Bats.
Mendenhall et al. Transboundary and Emerging Diseases 2017
The ecology and adaptive evolution of influenza A interspecies transmission.
Joseph et al. Influenza and other respiratory viruses 2017
Influence of age and body condition on astrovirus infection of bats in Singapore: An evolutionary and epidemiological analysis.
Mendenhall et al. One Health 2017
doi.org/10.1016/j.onehlt.2017.10.001
Evidence for the Introduction, Reassortment, and Persistence of Diverse Influenza A Viruses in Antarctica.
Hurt et al. Journal of Virology 2016
Evidence of canine parvovirus transmission to a civet cat (Paradoxurus musangus) in Singapore.
Mendenhall et al. One Health 2016
Ecosystem interactions underlie the spread of avian influenza A viruses with pandemic potential.
Bahl et al. PloS Pathogens 2016
Deep sequencing of influenza A virus from a human challenge study reveals a selective bottleneck and only limited intrahost genetic diversification.
Leonard et al. Journal of Virology 2016
The constrasting phylodynamics of human influenza B viruses.
Vijaykrishna et al. eLife 2015
Phylodynamics of H1N1/2009 influenza reveals the transition from host adaptation to immune driven selection.
Su et al. Nature Communications 2015
Influenza A virus migration and persistence in North American wild birds.
Bahl et al. PloS Pathogens 2013
Long-term evolution and transmission dynamics of swine influenza A viruses.
Vijaykrishna et al. Nature 2011
doi.org/10.1038/nature10004
Temporally structured metapopulation dynamics and persistence of influenza A H3N2 virus in humans.
Bahl et al. PNAS 2011
Ressortment of pandemic H1N1/2009 influenza A virus in swine.
Vijaykrishna et al. Science 2010
Origin and evolutionary genomics of the 2009 swine-origin H1N1 influenza A epidemic
Smith et al. Nature 2009
Dating the emergence of pandemic influenza viruses.
Smith et al. PNAS 2009
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